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Selected References

Lo WC, Lee CC, Lee CY, Lyu PC.
CPDB: a database of circular permutation in proteins. Nucleic Acids Research 2009, 37:D328-332. [Abstract] [PDF]

Lo WC, Lyu PC.
CPSARST: an efficient circular permutation search tool applied to the detection of novel protein structural relationships. Genome Biology 2008, 9:R11. [Abstract] [PDF]

Iwakura M, Nakamura T, Yamane C, Maki K.
Systematic circular permutation of an entire protein reveals essential folding elements. Nat Struct Biol 2000, 7:580-585.

Qian Z, Lutz S.
Improving the catalytic activity of Candida antarctica lipase B by circular permutation. J Am Chem Soc 2005, 127:13466-13467.

Paszkiewicz KH, Sternberg MJ, Lappe M.
Prediction of viable circular permutants using a graph theoretic approach. Bioinformatics 2006, 22:1353-1358.

Amitai G, Shemesh A, Sitbon E, Shklar M, Netanely D, Venger I, Pietrokovski S.
Network analysis of protein structures identifies functional residues. J Mol Biol 2004, 344:1135-1146.

Schmidt-Goenner T, Guerler A, Kolbeck B, Knapp EW.
Circular permuted proteins in the universe of protein folds. Proteins-Structure Function and Bioinformatics 2010, 78:1618-1630.

 



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Yu-Hung Chen, Li-Fen Wang, Jenn-Kang Hwang, and Wei-Cheng Lo
Maintained at Institute of Bioinformatics and Systems Biology, NCTU, Taiwan